 Figure 3. Tryptic Peptide Maps of the Model Protein DP Samples (a) Reference Material (b) H2O2–stressed (c) High-pH–stressed
| Results of the peptide map analysis of H2O2-treated model protein DP are presented in Figure 3 and Table 2. Methionine (Met) residue is the most reactive in oxidation as compared to other potential targets such as cysteine, histidine, tryptophan, and tyrosine. Met oxidation can spontaneously occur in the presence of atmospheric oxygen during the purification and storage of proteins.
The intact T5 fragment represents a glycopeptide with multiple glycoforms. On the peptide map it eluted as a broad, irregular-shaped peak in the retention time interval 67 to 70 min (Figure 3a). When treated with H2O2, this peptide, which contains two Met residues, formed a mixture of degradants with one or two Met-sulfoxides. This mixture of oxidized glycopeptides eluted over broad and overlapping retention intervals, which made chromatographic separation and quantitation of these species not possible.
 Table 2. Quantitation of Intact and Sulfoxidized Peptides of the Model Protein Tryptic Map
| The H2O2 treatment induced Met-sulfoxide formation in every Met position in the model protein (Figure 3b), with the extent of degradation dependent on the Met location in the sequence. The highest level of degradation was observed for the T6 fragment with Met-sulfoxide at 85%, while the N-terminal T1 fragment was oxidized less than 10% (Table 2).
Elevated temperatures and a shift to basic pH create favorable conditions for side chain deamidation of Asn and Gln amino acids in proteins. The Asn-Gly sequence is very sensitive to this reaction, which results in substitution of Asn for Asp or iso-Asp residues. The peptide map profile of a high-pH-stressed sample shows formation of two variants of the T26 fragment (Figure 3c). MS/MS analysis confirmed that these peaks represent T26 peptide deamidated at one or two Asn positions. Another deamidation site was found in the T15 peptide. In addition to these peptides, a deamidated variant of the T12 fragment was found to be eluting after T12. A detected elevated level of Met-oxidation in the T6 fragment was apparently the result of a parallel oxidation reaction during the prolonged incubation.
With the exception of oxidation, other types of stress had little or no effect on specific binding as determined by BIACore and competitive ELISA (Table 1). At the same time, increase of in vitro bioactivity was observed for samples after high- and low-pH stress and UV light exposure. The results indicating sensitivity to light and elevated temperature exposure were used to determine handling, storage, and transportation conditions for the product.
CONCLUSIONS
Stress testing studies are conducted to challenge the specificity of stability-indicating and impurity-monitoring methods as part of the validation protocol. Another major goal is to investigate degradation products and pathways. The results of the forced degradation studies are required to be included in a Phase III IND filing. We recommend that you start the study as early as possible to be able to provide valuable information that can be used to improve formulations and the manufacturing process.
The choice of stress conditions should be consistent with product decomposition under normal manufacturing, storage, and use conditions. Recommended stress factors include high and low pH, elevated temperature, photolysis, and oxidation. The extent of the stress applied in forced degradation studies should ensure formation of the desired amount (usually 10 to 20%) of degradation.
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